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Hi Stefan - Plotaroute isn't currently designed for importing locations only routes. You can export routes from Garmin Connect (under the Courses) section in GPX format and import these.
I can't work out how to get locations I save on my Garmin Instinct 2 watch into Plotaroute. Tried exporting the waypoints from Garmin Explore in a GPS file and then loading the GPS file into Plotaroute. Plotaroute throws an error No GPS data was found in this file.